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I upgraded wordpress to 3.1.1 (previously 3.0.4) and it seems that using short codes in widgets is broken.
The plugin is at v 1.2.6
The site is: ‘http://thenutritionhotspot.com’
I did put shortcode into a page and then used Firebug to extract HTML to get the video the size that I wanted it (it was defaulting to plugin defaults), but this is totally inconvenient.